miRBase entry: gma-MIR5559

Stem-loop gma-MIR5559


Accession
MI0019713
Description
Glycine max gma-MIR5559 precursor miRNA
Gene family
MIPF0001606; MIR5559

Literature search
2 open access papers mention gma-MIR5559
(3 sentences)

Sequence

uauuuccuuuUACUUGGUGAAUUGUUGGAUCacucugugucaaccaaccauauuggauuuggagcuucaugcagaagacaaaagagaugcaagccagaggaaauauagaaugauccaacauuucacuauguaaaaggauugc
....(((((((((.(((((((.((((((((((.(((((((...((.......(((.((((....((((.....)))).......)))).)))......))..))))))).)))))))))).))))))).)))))))))....

Structure
uauu         U       U          c       caa  aaccaua   g    ---ggag    a 
    uccuuuUAC UGGUGAA UGUUGGAUCa ucugugu   cc       uug auuu       cuuc u
    ||||||||| ||||||| |||||||||| |||||||   ||       ||| ||||       |||| g
    aggaaaaug aucacuu acaaccuagu agauaua   gg       aac uaga       gaag c
cguu         u       u          a       -aa  -agaccg   g    gaaaaca    a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr19: 776239-776380 [+]

Database links

Mature gma-miR5559

Accession MIMAT0023168
Description Glycine max gma-miR5559 mature miRNA
Sequence 11 - UACUUGGUGAAUUGUUGGAUC - 31
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22156213
    MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
    "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
    "Genes Dev (2011) 25:2540-2553