miRBase entry: gma-MIR5773

Stem-loop gma-MIR5773


Accession
MI0019720
Description
Glycine max gma-MIR5773 precursor miRNA


Sequence

gauuuucuuaUUUUUAAAAGGUUCAGUUAGGUccuuuauuuuuuaaaauggguucaauuuggucccacuuaaacucauuuuuugaaaauguucgaagcuguuggaagaaaaugggaccaacccaauuuaaaaaauaaaagaccuaauugaaccuuuuaaaaauaaagggacca
...((((((((((((((((((((((((((((((.(((((((((((((.(((((......(((((((((((.(((.....(((((((....)))))))..)))..)))....))))))))))))).))))))))))))).)))))))))))))))))))))))).))))))...

Structure
gau      -                        c             a     ucaauu        ----   -a   ucauu       a 
   uuucuu aUUUUUAAAAGGUUCAGUUAGGUc uuuauuuuuuaaa ugggu      ugguccca    cuu  aac     uuuugaa a
   |||||| |||||||||||||||||||||||| ||||||||||||| |||||      ||||||||    |||  |||     |||||||  
   agggaa uaaaaauuuuccaaguuaauccag aaauaaaaaauuu accca      accagggu    gaa  uug     gaagcuu u
acc      a                        a             a     ------        aaaa   gg   ---uc       g 


Annotation confidence Not enough data
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Genome context
chr3: 44861560-44861732 [+]

Database links

Mature gma-miR5773

Accession MIMAT0023175
Description Glycine max gma-miR5773 mature miRNA
Sequence 11 - UUUUUAAAAGGUUCAGUUAGGU - 32
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22156213
    MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
    "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
    "Genes Dev (2011) 25:2540-2553