miRBase entry: gma-MIR5774a

Stem-loop gma-MIR5774a


Accession
MI0019721
Description
Glycine max gma-MIR5774a precursor miRNA
Gene family
MIPF0001567; MIR5774


Sequence

acgaguuugaGCUGGCGUCGACACGUGGCAUgggacuagucaguuaaacuggcgauuuguaaguagcagggcuccucagcuuuuucaggguugcagcucagcuuuuucaggguuguaggcacgcgugaaggcagcaggagcagcacuuga
.((((((((..((.(((((..((((((((.((.((((.((((((...))))))...(((.(((.(((.(((((...(((((((...))))))).))))).))).)))))))))).)).)).))))))..))).)).))..))).))))).

Structure
a     -   aG  G  -   GA      -  A  g    agucaguuaaacuggcgau   u   u   a     ccu       u 
 cgagu uug  CU GC GUC  CACGUG GC Ug gacu                   uug aag agc gggcu   cagcuuu  
 ||||| |||  || || |||  |||||| || || ||||                   ||| ||| ||| |||||   ||||||| u
 guuca gac  gg cg cgg  gugcgc cg au uugg                   gac uuu ucg cucga   guuggga  
a     c   ga  a  a   aa      a  g  g    -------------------   -   u   a     --c       c 


Annotation confidence Not enough data
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Genome context
chr4: 11410437-11410586 [+]

Database links

Mature gma-miR5774a

Accession MIMAT0023176
Description Glycine max gma-miR5774a mature miRNA
Sequence 11 - GCUGGCGUCGACACGUGGCAU - 31
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22156213
    MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
    "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
    "Genes Dev (2011) 25:2540-2553