miRBase entry: gma-MIR5782

Stem-loop gma-MIR5782


Accession
MI0019732
Description
Glycine max gma-MIR5782 precursor miRNA


Sequence

gguaaauugaauugaacuucuccuauaaguuaaaaucaacuuauacacauaauuuucguagaaacucuauccuauagcuucuucaaaagcugaaguguguaaccugauuuUAGCUGGUAGGAGAAGUUCAGuucauuuuac
.(((((.(((((((((((((((((((.(((((((((((..((((((((.........(((((...)))))....((((((......))))))..))))))))..))))))))))).))))))))))))))))))).)))))

Structure
g     u                   a           ac        auaauuuucguagaaacucuauccua      cu 
 guaaa ugaauugaacuucuccuau aguuaaaauca  uuauacac                          uagcuu  u
 ||||| ||||||||||||||||||| |||||||||||  ||||||||                          ||||||   
 cauuu acuuGACUUGAAGAGGAUG UCGAUuuuagu  aaugugug                          gucgaa  c
-     u                   G           cc        ------------------------aa      aa 


Annotation confidence Not enough data
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Genome context
chr7: 12611603-12611743 [-]

Database links

Mature gma-miR5782

Accession MIMAT0023187
Description Glycine max gma-miR5782 mature miRNA
Sequence 111 - UAGCUGGUAGGAGAAGUUCAG - 131
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22156213
    MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
    "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
    "Genes Dev (2011) 25:2540-2553