Stem-loop gma-MIR169o

Accession

MI0019751

Description

Glycine max gma-MIR169o precursor miRNA

Gene family

MIPF0001058; MIR169_6

Literature search

23 open access papers mention gma-MIR169o
(100 sentences)

Sequence

agaguagauuUGAGCCAGGAUGGCUUGCCGGCauaugcuuaaaagcaaagauccccuaugaggguguugcugguggccauccaugcucauauuuguucc
.((((((((.(((((..((((((((.(((((((..((((....))))......((((...))))...)))))))))))))))..))))).)))))))).

Structure

a        u     CA        U       ------------------ua    u 
 gaguagau UGAGC  GGAUGGCU GCCGGCa                    ugcu a
 |||||||| |||||  |||||||| |||||||                    ||||  
 cuuguuua acucg  ccuaccgg uggucgu                    acga a
c        u     ua        -       ugugggaguauccccuagaa    a 

Annotation confidence Not enough data

Genome context

chr13: 21496986-21497084 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from gma-MIR169o

Mature gma-miR169o

• Accession: MIMAT0023206
• Description: Glycine max gma-miR169o mature miRNA
• Sequence: 11 - UGAGCCAGGAUGGCUUGCCGGC - 32
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553