miRBase entry: gma-MIR169p

Stem-loop gma-MIR169p


Accession
MI0019756
Description
Glycine max gma-MIR169p precursor miRNA
Gene family
MIPF0001058; MIR169_6

Literature search
23 open access papers mention gma-MIR169p
(101 sentences)

Sequence

gaguacgauuUGAGCCAAGGAUGACUUGCCGacauguggaaaagcuuaaucccuuuucaagguguugucggcgaggaaucugggcucauuugugcucc
((((((((..((((((..((((..((((((((((....((((((........)))))).......))))))))))..)))).)))))).)))))))).

Structure
-        uu      AA    GA          ---ugug      cuu 
 gaguacga  UGAGCC  GGAU  CUUGCCGaca       gaaaag   a
 ||||||||  ||||||  ||||  ||||||||||       ||||||    
 cucguguu  acucgg  ucua  gagcggcugu       cuuuuc   a
c        -u      -g    ag          uguggaa      ccu 


Annotation confidence Not enough data
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Genome context
chr15: 14192081-14192178 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from gma-MIR169p
Name Accession Chromosome Start End Strand Confidence




Database links

Mature gma-miR169p

Accession MIMAT0023211
Description Glycine max gma-miR169p mature miRNA
Sequence 11 - UGAGCCAAGGAUGACUUGCCG - 31
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22156213
    MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
    "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
    "Genes Dev (2011) 25:2540-2553