Stem-loop sequence gma-MIR399b

Accession

MI0019758 (change log)

Description

Glycine max miR399b stem-loop

Gene family

MIPF0000015; MIR399

Literature search

14 open access papers mention gma-MIR399b
(90 sentences)

Stem-loop

   c        a        c      cc        -----------        a 
5'  aaaucagc auagggca cucucu  uggcaggu           auuuuugg g
    |||||||| |||||||| ||||||  ||||||||           |||||||| c
3'  uuuggucg ugucccgu gagagg  accguuca           uaaaaacc u
   -        g        u      aa        auaacuguaac        a 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Glycine_max_v2.0; GCA_000004515.3): chr16: 36115809-36115909 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from gma-MIR399b

• gma-MIR399n: chr16: 36109955-36110082 [+]
• gma-MIR399b: chr16: 36115809-36115909 [+]

Database links

• miRBase Tracker:MI0019758

Mature sequence gma-miR399b

• Accession: MIMAT0023213
• Sequence: 71 - ugccaaaggagaguugcccug - 91
• Evidence: experimental; Illumina [1]

References

1. PMID:22156213 "MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs" Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC Genes Dev. 25:2540-2553(2011).