miRBase entry: gma-MIR171r

Stem-loop gma-MIR171r


Accession
MI0019774
Description
Glycine max gma-MIR171r precursor miRNA
Gene family
MIPF0000104; MIR171_2

Literature search
15 open access papers mention gma-MIR171r
(36 sentences)

Sequence

gaaguggacuggcgugguauugcuucugcucaucuuugcauaugaauuucaucacaucccuuuaaauaagaCGAGCCGAAUCAAUACCACUCcaguacacuu
.(((((.(((((.(((((((((.(((.((((.((((...............................)))).)))).))).))))))))).))))).)))))

Structure
g     g     c         c   u    a    ugcauaugaauuuc 
 aagug acugg gugguauug uuc gcuc ucuu              a
 ||||| ||||| ||||||||| ||| |||| ||||              u
 uucac ugacC CACCAUAAC AAG CGAG agaa              c
-     a     U         U   C    C    uaaauuucccuaca 


Annotation confidence Not enough data
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Genome context
chr4: 50116148-50116249 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from gma-MIR171r
Name Accession Chromosome Start End Strand Confidence




Database links

Mature gma-miR171r

Accession MIMAT0023229
Description Glycine max gma-miR171r mature miRNA
Sequence 72 - CGAGCCGAAUCAAUACCACUC - 92
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22156213
    MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
    "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
    "Genes Dev (2011) 25:2540-2553