Stem-loop sequence gma-MIR171r

Accession

MI0019774 (change log)

Description

Glycine max miR171r stem-loop

Gene family

MIPF0000104; MIR171_2

Literature search

15 open access papers mention gma-MIR171r
(36 sentences)

Stem-loop

   g     g     c         c   u    a    ugcauaugaauuuc 
5'  aagug acugg gugguauug uuc gcuc ucuu              a
    ||||| ||||| ||||||||| ||| |||| ||||              u
3'  uucac ugacc caccauaac aag cgag agaa              c
   -     a     u         u   c    c    uaaauuucccuaca 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Glycine_max_v2.0; GCA_000004515.3): chr4: 50116148-50116249 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from gma-MIR171r

• gma-MIR171b: chr4: 50115835-50115926 [+]
• gma-MIR171r: chr4: 50116148-50116249 [+]

Database links

• miRBase Tracker:MI0019774

Mature sequence gma-miR171r

• Accession: MIMAT0023229
• Sequence: 72 - cgagccgaaucaauaccacuc - 92
• Evidence: experimental; Illumina [1]

References

1. PMID:22156213 "MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs" Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC Genes Dev. 25:2540-2553(2011).