Stem-loop sequence gma-MIR399e

Accession

MI0019777 (change log)

Description

Glycine max miR399e stem-loop

Gene family

MIPF0000015; MIR399

Literature search

14 open access papers mention gma-MIR399e
(93 sentences)

Stem-loop

   guguggaucuucccaguugcagcugcauuaca        u    a         a  -  c  u  --ua    ucuca 
5'                                 gggcaagu cucc uuggcaggu gc ca ua ga    ugca     u
                                   |||||||| |||| ||||||||| || || || ||    ||||     a
3'                                 cccguuua gagg aaccgucua cg gu au cu    acgu     a
   --------------------uccucuuagcga        -    a         a  u  a  u  uuca    uuaua 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Glycine_max_v2.0; GCA_000004515.3): chr5: 35238378-35238516 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from gma-MIR399e

• gma-MIR399e: chr5: 35238378-35238516 [-]
• gma-MIR399d: chr5: 35229349-35229451 [-]

Database links

• miRBase Tracker:MI0019777

Mature sequence gma-miR399e

• Accession: MIMAT0023232
• Sequence: 109 - ugccaaaggagauuugcccag - 129
• Evidence: experimental; Illumina [1]

References

1. PMID:22156213 "MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs" Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC Genes Dev. 25:2540-2553(2011).