Stem-loop sequence gma-MIR395e

Accession

MI0019789 (change log)

Description

Glycine max miR395e stem-loop

Gene family

MIPF0000016; MIR395

Literature search

15 open access papers mention gma-MIR395e
(70 sentences)

Stem-loop

   gc   cu  ug         ug          ----gaau   cua           uau 
5'   ugu  cu  gaguuccuc  agcacuucac        gac   guucuauuugg   u
     |||  ||  |||||||||  ||||||||||        |||   |||||||||||   a
3'   aca  gg  uucaagggg  uugugaagug        cug   uaagauagauu   c
   ca   ug  uu         gu          aauauauu   --a           ucc 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Glycine_max_v2.0; GCA_000004515.3): chr8: 41424558-41424674 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from gma-MIR395e

• gma-MIR395e: chr8: 41424558-41424674 [-]
• gma-MIR395d: chr8: 41415505-41415625 [-]

Database links

• miRBase Tracker:MI0019789

Mature sequence gma-miR395e

• Accession: MIMAT0023244
• Sequence: 87 - ugaaguguuugggggaacuuu - 107
• Evidence: experimental; Illumina [1]

References

1. PMID:22156213 "MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs" Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC Genes Dev. 25:2540-2553(2011).