Stem-loop sequence gma-MIR395g

Accession

MI0019791 (change log)

Description

Glycine max miR395g stem-loop

Gene family

MIPF0000016; MIR395

Literature search

15 open access papers mention gma-MIR395g
(70 sentences)

Stem-loop

   g     cu  ug         ug          -ac   -------      gag a     a   ua 
5'  guugu  cu  gaguuccuc  aacacuucac   gug       ggacua   u guggu uug  u
    |||||  ||  |||||||||  ||||||||||   |||       ||||||   | ||||| |||  c
3'  caaca  ga  uucaagggg  uugugaagug   cac       ccugau   g uacua gau  c
   -     ug  uu         gu          aac   uacuacu      -aa a     -   uu 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Glycine_max_v2.0; GCA_000004515.3): chr8: 41445444-41445571 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from gma-MIR395g

• gma-MIR395g: chr8: 41445444-41445571 [-]
• gma-MIR395f: chr8: 41439069-41439190 [-]

Database links

• miRBase Tracker:MI0019791

Mature sequence gma-miR395g

• Accession: MIMAT0023246
• Sequence: 98 - ugaaguguuugggggaacuuu - 118
• Evidence: experimental; Illumina [1]

References

1. PMID:22156213 "MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs" Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC Genes Dev. 25:2540-2553(2011).