Stem-loop gma-MIR5674b

Accession

MI0019793

Description

Glycine max gma-MIR5674b precursor miRNA

Literature search

2 open access papers mention gma-MIR5674b
(2 sentences)

Sequence

cacuuggguugaugauuuucaauacgauuucauuuaagaaguuaguugcuucuuucagcuuaccaacaaugaagccacacaaucaagaauuacaaguggcaacauuaacaaaaaucccuuugacaaccauuuuaggaaaaaaaaccauacaaguuuauguuuacauaaagucaaUAAUUGUGUUGUACAUUAUCAcauuagaguc
.((((.((((((((((...((((((((((......(((((((.....))))))).............((((..(((((.................)))))..)))).............(((((..((......)).................((((((....))))))))))).))))))))))...))))))).))).)))).

Structure

c    g   -       uuu          -------------------------------ucauuuaagaaguuaguugcuucuuucagcuuaccaac    aa     acaauca 
 acuu ggu ugaugau   caauacgauu                                                                     aaug  gccac       a
 |||| ||| |||||||   ||||||||||                                                                     ||||  |||||       g
 ugag uua ACUAUUA   GUUGUGUUAA                                                                     uuac  cggug       a
c    a   c       CAU          Uaacugaaauacauuuguauuugaacauaccaaaaaaaaggauuuuaccaacaguuucccuaaaaacaa    aa     aacauua 

Annotation confidence Not enough data

Genome context

chr9: 40101457-40101661 [+]

Mature gma-miR5674b

• Accession: MIMAT0023248
• Description: Glycine max gma-miR5674b mature miRNA
• Sequence: 175 - UAAUUGUGUUGUACAUUAUCA - 195
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553