Stem-loop osa-MIR812p

Accession

MI0019799

Description

Oryza sativa osa-MIR812p precursor miRNA

Gene family

MIPF0000345; MIR812

Literature search

9 open access papers mention osa-MIR812p
(16 sentences)

Sequence

633 reads, 249 reads per million, 2 experiments

ccuauuuuaagugcagccaugauuuuccgugcacaacuuuaaucguccguuuuacuugaauuuuuuuugaaaaaaaugaaaaaguaagucacguauaaaguacuauucauauuuuaucaucccauaacaauaaaaaugcaaauuauaaaaaaaauucaaauaaGACGGACGAUUAAAGUUGGGCAUGaaaacuuaugguugcacuuaaaauggg
((((((((((((((((((((((.(((.(((((.(((((((((((((((((((((.((((((((((((((......((((.((((((.(....((((...))))....).)))))).))))..............(((....))).)))))))))))))).))))))))))))))))))))).))))).))).))))))))))))))))))))))

Structure

                      u   c     a                     c              -------------------aaaaaa    a      a ucac    a 
ccuauuuuaagugcagccauga uuu cgugc caacuuuaaucguccguuuua uugaauuuuuuuug                         auga aaagua g    guau  
|||||||||||||||||||||| ||| ||||| ||||||||||||||||||||| ||||||||||||||                         |||| |||||| |    |||| a
ggguaaaauucacguugguauu aaa GUACG GUUGAAAUUAGCAGGCAGaau aacuuaaaaaaaau                         uacu uuuuau c    caug  
                      c   a     G                     a              auuaaacguaaaaauaacaauaccc    a      a uuau    a 

Annotation confidence Low

Genome context

Chr8: 25425998-25426211 [+]

Mature osa-miR812p

• Accession: MIMAT0023254
• Description: Oryza sativa osa-miR812p mature miRNA
• Sequence: 164 - GACGGACGAUUAAAGUUGGGCAUG - 187
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22158467
   Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage
   "Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ"
   "Plant Cell (2011) 23:4185-4207