miRBase entry: osa-MIR5799

Stem-loop osa-MIR5799


Accession
MI0019813
Description
Oryza sativa osa-MIR5799 precursor miRNA

Literature search
2 open access papers mention osa-MIR5799
(7 sentences)

Sequence

17 reads, 17 reads per million, 2 experiments
uuuuugaaauAAGACGAAUAAUCAAACGUUGGACauaaacaguguaaaauuguugucuuucuaggacggggguaguauuuaucaauuuuagauuuaacguuuaacuauuuaucacuuuuagauu
..(((((((...((.(((((...((((((((((..((((....((((((((.(((((((...))))))).)))....)))))....))))..))))))))))...))))).))..)))))))..

Structure
uu       uAA  C     AUC          Ca    cagu     ----   g       u 
  uuugaaa   GA GAAUA   AAACGUUGGA  uaaa    guaaa    auu uugucuu  
  |||||||   || |||||   ||||||||||  ||||    |||||    ||| ||||||| c
  agauuuu   cu uuuau   uuugcaauuu  auuu    uauuu    ugg ggcagga  
uu       -ca  a     caa          ag    uaac     auga   g       u 


Annotation confidence Not enough data
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Genome context
Chr6: 10732163-10732286 [+]

Database links

Mature osa-miR5799

Accession MIMAT0023268
Description Oryza sativa osa-miR5799 mature miRNA
Sequence 11 - AAGACGAAUAAUCAAACGUUGGAC - 34
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22158467
    Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage
    "Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ"
    "Plant Cell (2011) 23:4185-4207