Stem-loop osa-MIR5800

Accession

MI0019814

Description

Oryza sativa osa-MIR5800 precursor miRNA

Literature search

3 open access papers mention osa-MIR5800
(4 sentences)

Sequence

agcaggauaucaauagcuaggauugagaggcaucaggagagcaccuucaacggguaacuuuccaucugcauCCCGGCUAUCGGAACGGCUGCu
(((((....((.((((((.((((......(((...((((((.((((.....))))..))))))...))))))).))))))..))....)))))

Structure

     gaua  -a      a    ugagag   uca      -c    u 
agcag    uc  auagcu ggau      gca   ggagag  accu c
|||||    ||  |||||| ||||      |||   ||||||  |||| a
uCGUC    AG  UAUCGG CCua      cgu   ccuuuc  uggg a
     GGCA  GC      C    ------   cua      aa    c 

Annotation confidence Not enough data

Genome context

Chr11: 24921149-24921241 [-]

Mature osa-miR5800

• Accession: MIMAT0023269
• Description: Oryza sativa osa-miR5800 mature miRNA
• Sequence: 72 - CCCGGCUAUCGGAACGGCUGC - 92
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22158467
   Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage
   "Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ"
   "Plant Cell (2011) 23:4185-4207