miRBase entry: osa-MIR5807

Stem-loop osa-MIR5807


Accession
MI0019824
Description
Oryza sativa osa-MIR5807 precursor miRNA

Literature search
1 open access papers mention osa-MIR5807
(1 sentences)

Sequence

6 reads, 8 reads per million, 2 experiments
aucugaaaguAGGAGGUCUGGAGAGUUAUGUGGCaggaagccaagccaggaaauguaauguaaucgacagcucuaacugaaacaucccuuauaaguuauuuuuagggaacaaacccuuauaaguaaucacacuucauaaugaggcacauuacuccucuaacugaaacaucccuuauaaguuauuuuuagggaacaaacccuuauaaguaaucacacuucauaaugaggcacauuacucaucuauaaaaucaauguggauagauugaucaucaugaccuacaugugagcugucgauuagauuagauuuccuggcuuccugucacauaacucuccacgccuccuauuuucagauu
(((((((((((((((((.((((((((((((((((((((.....(((((((((((.((((.((((((((((((((((((...............))))).....((((......))))....((((((....((((((.((((((...((((((....(((((...............))))).....((((......))))....))))))....)))))).))))))...))))))..........((((((........))))))...((((.....)))).))))))))))))).)))).))))))))))))))))))))))))))))))).))))))))))))))))).

Structure
-                 C                    agcca           g    g             uaacugaaacaucccuuauaaguuauuuuuagggaacaaacccuuaua      caca      a      -cac      ccucuaacugaaacaucccuuauaa 
 aucugaaaguAGGAGGU UGGAGAGUUAUGUGGCagga     agccaggaaau uaau uaaucgacagcuc                                                aguaau    cuucau augagg    auuacu                         g
 ||||||||||||||||| ||||||||||||||||||||     ||||||||||| |||| |||||||||||||                                                ||||||    |||||| ||||||    ||||||                          
 uagacuuuuauccuccg accucucaauacacuguccu     ucgguccuuua auua auuagcugucgag                                                ucauua    ggagua uacuuc    uaauga                         u
u                 c                    -----           g    g             -uguacauccaguacuacuaguuagauagguguaacuaaaauaucuac      -cac      a      acac      auauucccaaacaagggauuuuuau 


Annotation confidence Not enough data
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Genome context
Chr8: 3597497-3597849 [-]

Database links

Mature osa-miR5807

Accession MIMAT0023279
Description Oryza sativa osa-miR5807 mature miRNA
Sequence 11 - AGGAGGUCUGGAGAGUUAUGUGGC - 34
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22158467
    Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage
    "Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ"
    "Plant Cell (2011) 23:4185-4207