miRBase entry: osa-MIR5818

Stem-loop osa-MIR5818


Accession
MI0019836
Description
Oryza sativa osa-MIR5818 precursor miRNA

Literature search
2 open access papers mention osa-MIR5818
(4 sentences)

Sequence

aUCGAACUAGAAGGGCCAGGUUguauuugugcuucuccuggcacucccuugguuuuuau
...(((((((.((.((((((..(((....)))....)))))).))...)))))))....

Structure
-aUC       --A  G      --UU   u 
    GAACUAG   AG GCCAGG    gua u
    |||||||   || ||||||    |||  
    uuugguu   uc cggucc    cgu u
uauu       ccc  a      ucuu   g 


Annotation confidence Not enough data
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Genome context
Chr4: 13157348-13157406 [+]

Database links

Mature osa-miR5818

Accession MIMAT0023291
Description Oryza sativa osa-miR5818 mature miRNA
Sequence 2 - UCGAACUAGAAGGGCCAGGUU - 22
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22158467
    Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage
    "Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ"
    "Plant Cell (2011) 23:4185-4207