Stem-loop osa-MIR1319b

Accession

MI0019843

Description

Oryza sativa osa-MIR1319b precursor miRNA

Gene family

MIPF0001448; MIR1319

Literature search

3 open access papers mention osa-MIR1319b
(3 sentences)

Sequence

58 reads, 28 reads per million, 2 experiments

auaggugccgguuuuuuaaaaaaacccgacaCCUUUAAUAUAUUAUAGGUGUCGGuaaauuaaaaaucggcaccuauaauaaauuauaggugucgguuuuuuuaaaaaccggcaccugu
((((((((((((((((.(((((((((.(((((((.((((.((((((((((((((((.........)))))))))))))))).)))).))))))))))))))))))))))))))))))))

Structure

                u         c       U    A                aaa 
auaggugccgguuuuu aaaaaaacc gacaCCU UAAU UAUUAUAGGUGUCGGu   u
|||||||||||||||| ||||||||| ||||||| |||| ||||||||||||||||   u
uguccacggccaaaaa uuuuuuugg cugugga auua auaauauccacggcua   a
                -         -       u    a                aaa 

Annotation confidence Not enough data

Genome context

Chr3: 23399893-23400011 [+]

Mature osa-miR1319b

• Accession: MIMAT0023298
• Description: Oryza sativa osa-miR1319b mature miRNA
• Sequence: 32 - CCUUUAAUAUAUUAUAGGUGUCGG - 55
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22158467
   Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage
   "Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ"
   "Plant Cell (2011) 23:4185-4207