miRBase entry: osa-MIR5826

Stem-loop osa-MIR5826


Accession
MI0019845
Description
Oryza sativa osa-MIR5826 precursor miRNA

Literature search
1 open access papers mention osa-MIR5826
(1 sentences)

Sequence

7 reads, 7 reads per million, 2 experiments
acuaggggcuaaccacucuuuucacuuugagcuaggaauacuugcaagguguuguuuuuuuuucuccuccuagaccuguucuuccucuccccugcucucucucucucucucucauguucuuccucccacuccucucucuccuguuuugguuugagccucaacgugauggugagcaucuccuguuugcgucagcucaugggaugaaacuucugccccaccaugaugguggacagaaaggggaaggagaacucaaggaagaagaacacagguccagagugcaacuucuuacaagaauuccUAGCCCAAAGUGAGAAGAGUGGGUagccccuauu
..(((((((((.(((((((((((((((((.(((((((((.((((.((((.(((((...........(((...((((((((((((...(((.........................(((((((.((((.((.(((.((.((.((((..(((....)))..)))).)).)).)))((((((.((...((....)).)).))))))....(((((..((((((...)))))).))))))))))).)))))))....))).)))))..)))))))..))).))))).)))).)))).))))))))).))))))))))))))))).)))))))))..

Structure
ac         a                 a         a    c    u     uuuuuuuucuc   cua       --     cuc   ccugcucucucucucucucucucau       c    a  -------------------------------------------------------------c   u  c  c    uu   u 
  uaggggcua ccacucuuuucacuuug gcuaggaau cuug aagg guugu           cuc   gaccugu  ucuuc   ucc                         guucuuc uccc cu                                                              cuc cu uc uguu  ggu u
  ||||||||| ||||||||||||||||| ||||||||| |||| |||| |||||           |||   |||||||  |||||   |||                         ||||||| |||| ||                                                              ||| || || ||||  |||  
  auccccgaU GGUGAGAAGAGUGAAAC CGAUccuua gaac uucu caacg           gag   cuggaca  agaag   agg                         caagagg aggg ga                                                              gag gg ag gcaa  ccg g
uu         G                 C         a    a    u     ----------u   -ac       ca     --a   ---------------------aacu       a    -  aagacaggugguaguaccaccccgucuucaaaguaggguacucgacugcguuuguccucuac   u  u  u    cu   a 


Annotation confidence Not enough data
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Genome context
Chr11: 12858909-12859240 [+]

Database links

Mature osa-miR5826

Accession MIMAT0023300
Description Oryza sativa osa-miR5826 mature miRNA
Sequence 299 - UAGCCCAAAGUGAGAAGAGUGGGU - 322
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22158467
    Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage
    "Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ"
    "Plant Cell (2011) 23:4185-4207