Stem-loop osa-MIR5835

Accession

MI0019855

Description

Oryza sativa osa-MIR5835 precursor miRNA

Literature search

1 open access papers mention osa-MIR5835
(3 sentences)

Sequence

2 reads, 3 reads per million, 1 experiments

uacaaguuguACGAAACCAUAGGGAUUUUGGCAUgugacauauauaauauuaguauuauguauuaugguucuaaaauuucacaaaaccacaaacguuaaccaauuuuacauacuuccauacuaauaaauuucagaugugauuauagaacacaaaagugugauagauuaaaguaaaaaugauguauagugugguuuugugaaacuugguuaugugccacaugguaaaacccuagugguuuuugugcaaaaguuuacucuugg
..((((((((((((((((((((((.(((((.((((((..((((((((((....))))))))))..(((((..............)))))...((((.(((((((((((((.....(((((((((((.((((......(((((.((..((((....))))..)))))))......))))..))).))))))))...))))))).))))))))))..)))))).))))))))).)))).)))))))))).........)))).

Structure

ua    ---------          -    -    A     G      acauauauaauauuaguauuauguauuaugguucuaaaauuucacaaaaccacaa    u      -       uacuu        -   -a    cagaug     a  ga    a 
  caag         uuguACGAAA CCAU AGGG UUUUG CAUgug                                                       acgu aaccaa uuuuaca     ccauacua aua  auuu      ugauu ua  acac a
  ||||         |||||||||| |||| |||| ||||| ||||||                                                       |||| |||||| |||||||     |||||||| |||  ||||      ||||| ||  ||||  
  guuc         aacguguuuu ggug uccc aaaau guacac                                                       ugua uugguu aaagugu     ggugugau ugu  uaaa      auuag au  ugug a
-g    ucauuugaa          u    a    -     g      -----------------------------------------------------cg    -      c       --uuu        a   ag    aaugaa     -  ag    a 

Annotation confidence Not enough data

Genome context

Chr6: 19306710-19306970 [-]

Mature osa-miR5835

• Accession: MIMAT0023310
• Description: Oryza sativa osa-miR5835 mature miRNA
• Sequence: 11 - ACGAAACCAUAGGGAUUUUGGCAU - 34
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22158467
   Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage
   "Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ"
   "Plant Cell (2011) 23:4185-4207