Stem-loop osa-MIR2873c

Accession

MI0019856

Description

Oryza sativa osa-MIR2873c precursor miRNA

Gene family

MIPF0001679; MIR2873

Literature search

2 open access papers mention osa-MIR2873c
(2 sentences)

Sequence

3 reads, 4 reads per million, 2 experiments

uuaccaaaacucaacuuuauaugggaguaaaaaaaggauaaauuucgggugaauagugacaggguauuauucauuugaaauuuguuauuuuuguuucuauCAAAUGAAGUUGAGUUUGGACa
...(((((.((((((((((((((((((((((((...((((((((((((((((((((((......)))))))))))))))))))))).)))))))))))))...))))))))))))))))...

Structure

uua     a           ---             aag                      ac 
   ccaaa cucaacuuuau   augggaguaaaaa   gauaaauuucgggugaauagug  a
   ||||| |||||||||||   |||||||||||||   ||||||||||||||||||||||   
   GGUUU GAGUUGAAGUA   uaucuuuguuuuu   uuguuuaaaguuuacuuauuau  g
aCA     -           AAC             --a                      gg 

Annotation confidence Not enough data

Genome context

Chr7: 27503433-27503554 [+]

Mature osa-miR2873c

• Accession: MIMAT0023311
• Description: Oryza sativa osa-miR2873c mature miRNA
• Sequence: 101 - CAAAUGAAGUUGAGUUUGGAC - 121
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22158467
   Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage
   "Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ"
   "Plant Cell (2011) 23:4185-4207