Stem-loop sequence hco-mir-50

Accession

MI0020005 (change log)

Description

Haemonchus contortus miR-50 stem-loop

Gene family

MIPF0000266; mir-50

Literature search

2 open access papers mention hco-mir-50
(12 sentences)

Stem-loop

   ----uuccacaa    -     uag  c              -    ug    c g 
5'             uggc ugcuu   cu ugauaugucuggua uucu  gguu a u
               |||| |||||   || |||||||||||||| ||||  |||| |  
3'             accg gcgag   ga gcuauacagauuau aaga  ccaa u g
   gucgucaucacc    u     cua  a              c    --    - a 

Confidence

Annotation confidence: not enough data

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Database links

• miRBase Tracker:MI0020005

Mature sequence hco-miR-50

• Accession: MIMAT0023329
• Sequence: 24 - ugauaugucugguauucuuggg - 45
• Evidence: experimental; Illumina [1]

References

1. PMID:22216965 "Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel" Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C BMC Genomics. 13:4(2012).