miRBase entry: hco-mir-124

Stem-loop hco-mir-124


Accession
MI0020014
Description
Haemonchus contortus hco-mir-124 precursor miRNA
Gene family
MIPF0000021; mir-124

Literature search
1 open access papers mention hco-mir-124
(1 sentences)

Sequence

ccguaucgacgcuggaucgcuucgcuuucaucggugacuuuagugugaaaugcaacUAAGGCACGCGGUGAAUGCCAAgcgaauaaagcguuucuuccuccu
.......((((((...((((((.((.((((((((((.(((((((((.....)).)))))))))).))))))).)).))))))....))))))..........

Structure
---ccguauc      -gga      c  u       -   a       -  g 
          gacgcu    ucgcuu gc uucaucg gug cuuuagu gu a
          ||||||    |||||| || ||||||| ||| ||||||| || a
          uugcga    agcgAA CG AAGUGGC CAC GGAAUca cg a
uccuccuucu      aaua      C  U       G   -       a  u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature hco-miR-124

Accession MIMAT0023338
Description Haemonchus contortus hco-miR-124 mature miRNA
Sequence 57 - UAAGGCACGCGGUGAAUGCCAA - 78
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22216965
    Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
    Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
    BMC Genomics (2012) 13:4