miRBase entry: hco-mir-5896

Stem-loop hco-mir-5896


Accession
MI0020016
Description
Haemonchus contortus hco-mir-5896 precursor miRNA


Sequence

cacccauauggaugcgucgguuAUGGGCAAUGUGUCCUGUUCAGAccgcacggaucuggcaggcacguuguucaauacagacaauccacugcucuuccu
........(((((..(((.((..(((((((((((.(((((.((((((....)).))))))))))))))))))))..)).))).)))))...........

Structure
---cacccaua     gc   g  uA           U     U    -  g 
           uggau  guc gu  UGGGCAAUGUG CCUGU CAGA cc c
           |||||  ||| ||  ||||||||||| ||||| |||| ||  
           accua  cag ca  acuuguugcac ggacg gucu gg a
uccuucucguc     -a   a  ua           -     -    a  c 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature hco-miR-5896

Accession MIMAT0023340
Description Haemonchus contortus hco-miR-5896 mature miRNA
Sequence 23 - AUGGGCAAUGUGUCCUGUUCAGA - 45
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22216965
    Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
    Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
    BMC Genomics (2012) 13:4