miRBase entry: hco-mir-87b

Stem-loop hco-mir-87b


Accession
MI0020024
Description
Haemonchus contortus hco-mir-87b precursor miRNA
Gene family
MIPF0000152; mir-87

Literature search
1 open access papers mention hco-mir-87b
(1 sentences)

Sequence

uacccuauaaggaugguccaucccgccugacacuugacucaaaccucauuuaaagaagGUGAGCAAAGUCUCAGGUGUGGcggccuauccuagaunnnnnnnnnng
.........(((((((.((..(((((((((.((((..(((..(((((.......).)))))))..)))).))))))).)).)).)))))))...............

Structure
------uacccuaua       u  au  -       c    ga   aa    - au 
               aggaugg cc  cc cgccuga acuu  cuc  accu c  u
               ||||||| ||  || ||||||| ||||  |||  |||| |  u
               uccuauc gg  GG GUGGACU UGAA  GAG  UGga g  a
gnnnnnnnnnnuaga       c  -c  U       C    AC   --    a aa 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature hco-miR-87b

Accession MIMAT0023349
Description Haemonchus contortus hco-miR-87b mature miRNA
Sequence 59 - GUGAGCAAAGUCUCAGGUGUGG - 80
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22216965
    Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
    Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
    BMC Genomics (2012) 13:4