miRBase entry: hco-mir-5903

Stem-loop hco-mir-5903


Accession
MI0020028
Description
Haemonchus contortus hco-mir-5903 precursor miRNA


Sequence

auucaauaaaacacagagagugcgacaccguucagauguuuuugucuccaguacaaugugauugUACCGGGAUAUGGAACGUCUGAAuggggucguacguuacccagacg
...................(((((((.(((((((((((((((((((.((.(((((((...))))))).)))))).))))))))))))))).)))))))............

Structure
auucaauaaaacacagaga       a               -    u  a       g 
                   gugcgac ccguucagauguuuu uguc cc guacaau  
                   ||||||| ||||||||||||||| |||| || ||||||| u
                   caugcug gguAAGUCUGCAAGG AUAG GG CAUguua  
-------gcagacccauug       g               U    -  C       g 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature hco-miR-5903

Accession MIMAT0023354
Description Haemonchus contortus hco-miR-5903 mature miRNA
Sequence 65 - UACCGGGAUAUGGAACGUCUGAA - 87
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22216965
    Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
    Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
    BMC Genomics (2012) 13:4