miRBase entry: hco-mir-5908

Stem-loop hco-mir-5908


Accession
MI0020036
Description
Haemonchus contortus hco-mir-5908 precursor miRNA

Literature search
1 open access papers mention hco-mir-5908
(1 sentences)

Sequence

agucccagcguucagucuaaugcGAUGAUUGUGCACUGGUGAGGuacgaaugguacUUCAUCAGGCCUCAGUCAUCUACAUucgacugaacuucgcuucaugcaga
.........((((((((.((((.((((((((.((.((((((((((((.....))))))))))))))..))))))))..)))).))))))))...((.....))...

Structure
------agucccagc        u    -c        -U  A            g 
               guucaguc aaug  GAUGAUUG  GC CUGGUGAGGuac a
               |||||||| ||||  ||||||||  || |||||||||||| a
               caagucag uUAC  CUACUGAC  CG GACUACUUcaug u
agacguacuucgcuu        c    AU        UC  -            g 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature hco-miR-5908-5p

Accession MIMAT0023362
Description Haemonchus contortus hco-miR-5908-5p mature miRNA
Sequence 24 - GAUGAUUGUGCACUGGUGAGG - 44
Evidence experimental
Illumina [1]

Mature hco-miR-5908-3p

Accession MIMAT0023363
Description Haemonchus contortus hco-miR-5908-3p mature miRNA
Sequence 57 - UUCAUCAGGCCUCAGUCAUCUACAU - 81
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22216965
    Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
    Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
    BMC Genomics (2012) 13:4