miRBase entry: hco-mir-242

Stem-loop hco-mir-242


Accession
MI0020042
Description
Haemonchus contortus hco-mir-242 precursor miRNA


Sequence

uucaguaccaCUUGCGUAGGCCUUCGUGUAACGAgaauuaugucaucgugacacgaugcugcgcaaguaguacugcu
..((((((.((((((((((....((((((.((((((......)).)))).))))))..)))))))))).))))))..

Structure
uu      c          GCCU      A    -  au 
  caguac aCUUGCGUAG    UCGUGU ACGA ga  u
  |||||| ||||||||||    |||||| |||| ||   
  gucaug ugaacgcguc    agcaca ugcu cu  a
uc      a          --gu      g    a  gu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature hco-miR-242

Accession MIMAT0023369
Description Haemonchus contortus hco-miR-242 mature miRNA
Sequence 11 - CUUGCGUAGGCCUUCGUGUAACGA - 34
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22216965
    Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
    Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
    BMC Genomics (2012) 13:4