miRBase entry: hco-mir-5912a

Stem-loop hco-mir-5912a


Accession
MI0020048
Description
Haemonchus contortus hco-mir-5912a precursor miRNA
Gene family
MIPF0001497; mir-5912


Sequence

acuuugguguggggugggguuaggugcauucggguauguccucggguagucggaUAUUCGAAUCAUCUGCUCCCAGCCaagcuauauu
....((((...((.(((((.((((((.((((((((((....((((....)))))))))))))))))))).))))).))..))))....

Structure
acuu    gug  g     u      c          gucc    g 
    uggu   gg ugggg uaggug auucggguau    ucgg u
    ||||   || ||||| |||||| ||||||||||    ||||  
    aucg   CC ACCCU GUCUAC UAAGCUUAUa    ggcu a
uuau    -aa  G     C      -          ----    g 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature hco-miR-5912a

Accession MIMAT0023376
Description Haemonchus contortus hco-miR-5912a mature miRNA
Sequence 55 - UAUUCGAAUCAUCUGCUCCCAGCC - 78
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22216965
    Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
    Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
    BMC Genomics (2012) 13:4