miRBase entry: hco-mir-5897c

Stem-loop hco-mir-5897c


Accession
MI0020052
Description
Haemonchus contortus hco-mir-5897c precursor miRNA
Gene family
MIPF0001517; mir-5897


Sequence

ugguuggaagaacagucccagaugauucguacaaaguccgaccauaggaggUUUUGUAUGUAUUAUCUGGAAUUgugcacaacc
.(((((.....(((((.(((((((((.(((((((((.((..(....)..))))))))))).))))))))).)))))...)))))

Structure
u     gaaga     c         u         u  ga c 
 gguug     acagu ccagaugau cguacaaag cc  c a
 |||||     ||||| ||||||||| ||||||||| ||  |  
 ccaac     ugUUA GGUCUAUUA GUAUGUUUU gg  g u
-     --acg     A         U         -  ag a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature hco-miR-5897c

Accession MIMAT0023380
Description Haemonchus contortus hco-miR-5897c mature miRNA
Sequence 52 - UUUUGUAUGUAUUAUCUGGAAUU - 74
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22216965
    Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
    Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
    BMC Genomics (2012) 13:4