Stem-loop hco-mir-5890d

Accession

MI0020065

Description

Haemonchus contortus hco-mir-5890d precursor miRNA

Gene family

MIPF0001378; mir-5890

Sequence

acuccuagucacgcauuuaugcggcagcacaggacugaacugugggaggacuuauaugauuCUACCCCUUUCCAUUCUUAUGCugcuuuggag
.((((......((((....))))((((((.((((.((....(.((((((((......).)))).))))....)).)))).))))))...))))

Structure

a    uagucacgcauuuaugcg      c    c  aacu u   -    - uu 
 cucc                  gcagca agga ug    g ggg agga c  a
 ||||                  |||||| |||| ||    | ||| |||| |   
 gagg                  cguCGU UUCU AC    C CCC UCuu g  u
-    ---------------uuu      A    U  CUUU -   A    a ua 

Annotation confidence Not enough data

Genome context

Unknown

Mature hco-miR-5890d

• Accession: MIMAT0023393
• Description: Haemonchus contortus hco-miR-5890d mature miRNA
• Sequence: 62 - CUACCCCUUUCCAUUCUUAUGC - 83
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4