miRBase entry: hco-mir-5894b

Stem-loop hco-mir-5894b


Accession
MI0020071
Description
Haemonchus contortus hco-mir-5894b precursor miRNA

Literature search
1 open access papers mention hco-mir-5894b
(1 sentences)

Sequence

uauuuuuacuguugcuuaucagauuauagguuagcuauGCCUAUAUCUGAUGGUGUAGCggaaacgaga
........((((((((((((((((.((((((.......))))))))))))))).)))))))........

Structure
uauuuuua       -         u      ua 
        cuguugc uuaucagau auaggu  g
        ||||||| ||||||||| ||||||  c
        ggCGAUG GGUAGUCUA UAUCCG  u
agagcaaa       U         -      ua 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature hco-miR-5894b

Accession MIMAT0023400
Description Haemonchus contortus hco-miR-5894b mature miRNA
Sequence 39 - GCCUAUAUCUGAUGGUGUAGC - 59
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22216965
    Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
    Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
    BMC Genomics (2012) 13:4