miRBase entry: hco-mir-5890e

Stem-loop hco-mir-5890e


Accession
MI0020073
Description
Haemonchus contortus hco-mir-5890e precursor miRNA
Gene family
MIPF0001378; mir-5890


Sequence

agucacgcauuuaugcggcagcAUAGGACUGAACUGUGGGAGAacuuauaugauucuaccccuuuucauacuuaugcugcuucagaggugaauucacaa
.......(((((.((.(((((((((((..((((..(.((((((((......).)))).))))..))))..))))))))))).)).))))).........

Structure
--agucacg     a  c           AC    CU U   -    - uu 
         cauuu ug ggcagcAUAGG  UGAA  G GGG AGAa c  a
         ||||| || |||||||||||  ||||  | ||| |||| |   
         gugga ac ucgucguauuc  acuu  c ccc ucuu g  u
aacacuuaa     g  u           au    uu -   a    a ua 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature hco-miR-5890e

Accession MIMAT0023402
Description Haemonchus contortus hco-miR-5890e mature miRNA
Sequence 23 - AUAGGACUGAACUGUGGGAGA - 43
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22216965
    Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
    Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
    BMC Genomics (2012) 13:4