Stem-loop hco-mir-993

Accession

MI0020082

Description

Haemonchus contortus hco-mir-993 precursor miRNA

Sequence

cauuuucugguugauaaucguccuaccugauaguacgagauuguuccuauaucgaaaUAAGCUCGUCGCUACAGGCAGAAugaaagaaagccauugaucggucc
.......(((((.....((((.((.((((.(((((((((.(((((.(......).))))).))))).)))))))).)).)))).....)))))...........

Structure

----cauuuuc     gauaa    c  a    a    -     a     c ua 
           ugguu     ucgu cu ccug uagu acgag uuguu c  u
           |||||     |||| || |||| |||| ||||| ||||| |   
           accga     aguA GA GGAC AUCG UGCUC AAUaa g  a
ccuggcuaguu     aagaa    A  C    -    C     G     a cu 

Annotation confidence Not enough data

Genome context

Unknown

Mature hco-miR-993

• Accession: MIMAT0023413
• Description: Haemonchus contortus hco-miR-993 mature miRNA
• Sequence: 58 - UAAGCUCGUCGCUACAGGCAGAA - 80
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4