miRBase entry: hco-mir-5929

Stem-loop hco-mir-5929


Accession
MI0020083
Description
Haemonchus contortus hco-mir-5929 precursor miRNA


Sequence

ccauuccucgaagguccccuggUGAAUCGCUUUGUUCACUUUCAUGGucagaagguccaguaguuaacauugcgguuuucuaguguucuuccgauuuuucuggu
(((....(((.(((..(.((((.(((((((..((((.(((....(((.(.....).)))..))).))))..))))))).)))).)..))).)))......))).

Structure
-   --uucc   a   uc c    U       UU    C   UUCA   u a 
 cca      ucg agg  c cugg GAAUCGC  UGUU ACU    UGG c g
 |||      ||| |||  | |||| |||||||  |||| |||    ||| | a
 ggu      agc uuc  g gauc uuuggcg  acaa uga    acc g a
u   cuuuuu   c   uu u    u       uu    u   --ug   u g 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature hco-miR-5929

Accession MIMAT0023414
Description Haemonchus contortus hco-miR-5929 mature miRNA
Sequence 23 - UGAAUCGCUUUGUUCACUUUCAUGG - 47
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22216965
    Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
    Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
    BMC Genomics (2012) 13:4