miRBase entry: hco-mir-2

Stem-loop hco-mir-2


Accession
MI0020084
Description
Haemonchus contortus hco-mir-2 precursor miRNA
Gene family
MIPF0000049; mir-2

Literature search
1 open access papers mention hco-mir-2
(3 sentences)

Sequence

cuguccucaacaccggcacggcacgucaaaguggugggugauuugucgacuugcucaUAUCACAGCCAGCUUUGAUGUGCuguaaugggcaaaggggcgucucuc
.((((((.....(((..((((((((((((((((((..(((((.((..........)).))))).)))).))))))))))))))..))).....))))))......

Structure
-----c      caaca   gc              -    gg     u  ucga 
      uguccu     ccg  acggcacgucaaag uggu  gugau ug    c
      ||||||     |||  |||||||||||||| ||||  ||||| ||     
      gcgggg     ggu  uguCGUGUAGUUUC ACCG  CACUA ac    u
cucucu      aaacg   aa              G    -A     U  ucgu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature hco-miR-2

Accession MIMAT0023415
Description Haemonchus contortus hco-miR-2 mature miRNA
Sequence 58 - UAUCACAGCCAGCUUUGAUGUGC - 80
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22216965
    Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
    Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
    BMC Genomics (2012) 13:4