miRBase entry: hco-mir-5930

Stem-loop hco-mir-5930


Accession
MI0020085
Description
Haemonchus contortus hco-mir-5930 precursor miRNA


Sequence

caguucugagaccgauguuaagCAGGGGCGACGUAGAACACAUGCAcgugaaugcaugaguugcuagucgcccgacaccacuagacgacgacagcaacc
..((((((....((.((((.((...(((((((.((((((.((((((......)))))).))).)))))))))).......)).)))).)).))).))).

Structure
ca   -   agac  a    a  ----CAG       G   -   A      cg 
  guu cug    cg uguu ag       GGGCGAC UAG AAC CAUGCA  u
  ||| |||    || |||| ||       ||||||| ||| ||| ||||||   
  caa gac    gc gcag uc       cccgcug auc uug guacgu  g
-c   c   ---a  a    a  accacag       -   g   a      aa 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature hco-miR-5930

Accession MIMAT0023416
Description Haemonchus contortus hco-miR-5930 mature miRNA
Sequence 23 - CAGGGGCGACGUAGAACACAUGCA - 46
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22216965
    Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
    Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
    BMC Genomics (2012) 13:4