miRBase entry: hco-mir-5885b

Stem-loop hco-mir-5885b


Accession
MI0020086
Description
Haemonchus contortus hco-mir-5885b precursor miRNA
Gene family
MIPF0001404; mir-5885

Literature search
1 open access papers mention hco-mir-5885b
(1 sentences)

Sequence

aucgugaaacgguccguacgccaggguaugggugguggucugguaagcaugacgcuuaUGAGAUCACGCCUAUAUUCGCuuuguacaaguucgauuccugcccaa
...(.(((.(((...(((((...(((((((((((.((((((.((((((.....)))))).)))))))))))))))))....)))))....))).)))).......

Structure
----auc u   a   -ucc     -cca           g      g      a 
       g gaa cgg    guacg    ggguaugggug uggucu guaagc u
       | ||| |||    |||||    ||||||||||| |||||| |||||| g
       c cuu gcu    caugu    CUUAUAUCCGC ACUAGA Uauucg a
aacccgu -   a   ugaa     uuCG           -      G      c 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature hco-miR-5885b

Accession MIMAT0023417
Description Haemonchus contortus hco-miR-5885b mature miRNA
Sequence 59 - UGAGAUCACGCCUAUAUUCGC - 79
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22216965
    Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
    Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
    BMC Genomics (2012) 13:4