miRBase entry: hco-mir-5933

Stem-loop hco-mir-5933


Accession
MI0020094
Description
Haemonchus contortus hco-mir-5933 precursor miRNA


Sequence

cgcgccuuuuuuggauaucggugacuguucugcacagugcaGAAUGGUGAUUGUUGCGUCCGCAgaagacgcaggucuggaugaaccuuugguuuuguguuuuagguuca
..((((.............))))(((.....((((((.((.(((.((((((..(((((((.......)))))))))).......)))))).)).))))))....)))...

Structure
cgcgccuuuuuuggauaucggug   guucu      u  a   U   -------   UG       CG 
                       acu     gcacag gc GAA GGU       GAU  UUGCGUC  C
                       |||     |||||| || ||| |||       |||  |||||||  A
                       ugg     uguguu ug uuu cca       cug  gacgcag  g
--------------------acu   -auuu      u  g   -   aguaggu   --       aa 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature hco-miR-5933

Accession MIMAT0023425
Description Haemonchus contortus hco-miR-5933 mature miRNA
Sequence 42 - GAAUGGUGAUUGUUGCGUCCGCA - 64
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22216965
    Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
    Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
    BMC Genomics (2012) 13:4