miRBase entry: hco-mir-40c

Stem-loop hco-mir-40c


Accession
MI0020098
Description
Haemonchus contortus hco-mir-40c precursor miRNA


Sequence

caacaccuagcgagauggaaucaccucagaauaaccuuggugacgcugauuaagacuUCACCGGGAGUUCUGUGGUGAuaccuacuuuauuccuccaaac
...........(((..((.((((((.((((((...((((((((.(((.....)).).)))))))).)))))).)))))).))..))).............

Structure
--caacaccuagc   au  a      u      aac        c -  g 
             gag  gg aucacc cagaau   cuugguga g cu a
             |||  || |||||| ||||||   |||||||| | || u
             uuc  cc uAGUGG GUCUUG   GGGCCACU c ga u
caaaccuccuuau   au  a      U      --A        u a  a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature hco-miR-40c

Accession MIMAT0023429
Description Haemonchus contortus hco-miR-40c mature miRNA
Sequence 58 - UCACCGGGAGUUCUGUGGUGA - 78
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22216965
    Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
    Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
    BMC Genomics (2012) 13:4