miRBase entry: hco-mir-5936

Stem-loop hco-mir-5936


Accession
MI0020100
Description
Haemonchus contortus hco-mir-5936 precursor miRNA


Sequence

uaauuucuucaauagugagcaggaagcgaaaaggagcuuucauaguaucaaccuccugacgcugAUACUGUGAAAGCUCCUUUGUCccuuccugcucacuauuucacauu
..........((((((((((((((((.(((((((((((((((((((((((.(........).))))))))))))))))))))).)).)))))))))))))))).......

Structure
uaauuucuuc                c  -                     a cuc 
          aauagugagcaggaag ga aaaggagcuuucauaguauca c   c
          |||||||||||||||| || ||||||||||||||||||||| |    
          uuaucacucguccuuc CU UUUCCUCGAAAGUGUCAUAgu g   u
---uuacacu                c  G                     c cag 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature hco-miR-5936

Accession MIMAT0023431
Description Haemonchus contortus hco-miR-5936 mature miRNA
Sequence 65 - AUACUGUGAAAGCUCCUUUGUC - 86
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22216965
    Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
    Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
    BMC Genomics (2012) 13:4