Stem-loop hco-mir-5939

Accession

MI0020103

Description

Haemonchus contortus hco-mir-5939 precursor miRNA

Sequence

caccagaugggcuccugggcuccaacauauggcgaucgcagcaggauucgugccUGCCGUGGUCGCCAUGUGUUGGAAUCcacguguuccugcuucucgcuc
...(((..((((.(.((((.(((((((((((((((((((.(((((.......))))).))))))))))))))))))).)))).).)))))))..........

Structure

-------cac   au    u c    c                   a     au 
          cag  gggc c uggg uccaacauauggcgaucgc gcagg  u
          |||  |||| | |||| ||||||||||||||||||| |||||  c
          guc  cuug g acCU AGGUUGUGUACCGCUGGUG CGUcc  g
cucgcucuuc   --    u c    A                   C     gu 

Annotation confidence Not enough data

Genome context

Unknown

Mature hco-miR-5939

• Accession: MIMAT0023434
• Description: Haemonchus contortus hco-miR-5939 mature miRNA
• Sequence: 55 - UGCCGUGGUCGCCAUGUGUUGGAAUC - 80
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4