Stem-loop hco-mir-5943

Accession

MI0020108

Description

Haemonchus contortus hco-mir-5943 precursor miRNA

Sequence

acugucgcgcCGUCGGAGCGUCCCGCUGAGGCcuguccgcaucggugguugcucagcagggcgucccggcggugcggcuagg
.(((((((((((((((.((((((.(((((((((...(((...))).)))..)))))).)))))).))))))))))))).)).

Structure

a  -             A      C      --   ugu   c 
 cu gucgcgcCGUCGG GCGUCC GCUGAG  GCc   ccg  
 || ||||||||||||| |||||| ||||||  |||   ||| a
 ga cggcguggcggcc ugcggg cgacuc  ugg   ggc  
g  u             c      a      gu   --u   u 

Annotation confidence Not enough data

Genome context

Unknown

Mature hco-miR-5943

• Accession: MIMAT0023439
• Description: Haemonchus contortus hco-miR-5943 mature miRNA
• Sequence: 11 - CGUCGGAGCGUCCCGCUGAGGC - 32
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4