Stem-loop hco-mir-55

Accession

MI0020110

Description

Haemonchus contortus hco-mir-55 precursor miRNA

Sequence

acgguacguugcggcaggggguaugcgaguguccgagccggggaUACCCGUAUAAGCCGUCUGCCGGCacagaagaag
.......((..(((((((.((((((((.((((((.......)))))).)))))..))).)))))))..))........

Structure

-acgguac  ug       g   --     a      ga 
        gu  cggcagg ggu  augcg gugucc  g
        ||  ||||||| |||  ||||| ||||||  c
        ca  GCCGUCU CCG  UAUGC CAUagg  c
gaagaaga  CG       G   AA     C      gg 

Annotation confidence Not enough data

Genome context

Unknown

Mature hco-miR-55

• Accession: MIMAT0023441
• Description: Haemonchus contortus hco-miR-55 mature miRNA
• Sequence: 45 - UACCCGUAUAAGCCGUCUGCCGGC - 68
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4