miRBase entry: hco-mir-5949

Stem-loop hco-mir-5949


Accession
MI0020119
Description
Haemonchus contortus hco-mir-5949 precursor miRNA


Sequence

gcgcgucgauuaguauguacgcgguguagugacagcccagauguaaugaaguCGUGGGCUUCACGACACUGGGggcgacaacg
....((((...........(.((((((.((((.(((((((((........))).)))))))))).)))))).)..))))....

Structure
gcgc    auuaguaugua g      a    c      -   gua 
    gucg           c cggugu guga agccca gau   a
    ||||           | |||||| |||| |||||| |||    
    cagc           G GUCACA CACU UCGGGU Cug   u
gcaa    ---------gg G      G    -      G   aag 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature hco-miR-5949

Accession MIMAT0023451
Description Haemonchus contortus hco-miR-5949 mature miRNA
Sequence 53 - CGUGGGCUUCACGACACUGGG - 73
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22216965
    Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
    Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
    BMC Genomics (2012) 13:4