miRBase entry: hco-mir-5950

Stem-loop hco-mir-5950


Accession
MI0020120
Description
Haemonchus contortus hco-mir-5950 precursor miRNA


Sequence

uggugguugaugucgauucagucguugucgucggcgucguggugaccgaugUGGAUUCAGUUGUUGUAGUCGGCgucguggugg
........(((((((((((((...(((..(((.((((((.(....))))))).))).)))...))).)))))))))).......

Structure
uggugguu          -   ucg   uc   g      u g 
        gaugucgauu cag   uug  guc gcgucg g u
        |||||||||| |||   |||  ||| |||||| |  
        cugCGGCUGA GUU   GAC  UAG Uguagc c g
-gguggug          U   GUU   -U   G      - a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature hco-miR-5950

Accession MIMAT0023452
Description Haemonchus contortus hco-miR-5950 mature miRNA
Sequence 52 - UGGAUUCAGUUGUUGUAGUCGGC - 74
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22216965
    Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
    Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
    BMC Genomics (2012) 13:4