miRBase entry: hco-mir-5957

Stem-loop hco-mir-5957


Accession
MI0020128
Description
Haemonchus contortus hco-mir-5957 precursor miRNA


Sequence

caagucaugacguuggucaaggagugccuggacugcucuauauuuagguGGUCAGGGCGAUACUUCAAGCAGGucagggguuu
.((.((.((((.(((.(...(((((((((.((((((.(((....))))))))).))))...))))).).))))))).)).)).

Structure
c  g  a    g   g caa     ---    g      u   u 
 aa uc ugac uug u   ggagu   gccu gacugc cua a
 || || |||| ||| |   |||||   |||| |||||| |||  
 uu gg acuG GAC A   CUUCA   CGGG CUGGug gau u
u  g  g    -   G --A     UAG    A      -   u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature hco-miR-5957

Accession MIMAT0023460
Description Haemonchus contortus hco-miR-5957 mature miRNA
Sequence 50 - GGUCAGGGCGAUACUUCAAGCAGG - 73
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22216965
    Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
    Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
    BMC Genomics (2012) 13:4