miRBase entry: hco-mir-5959

Stem-loop hco-mir-5959


Accession
MI0020131
Description
Haemonchus contortus hco-mir-5959 precursor miRNA


Sequence

ccccucuccgcuagaccuuuggcccuugacguucgagaaucagaucaauggacucUGCUUUUCUAACGCUCAAGGGCUAaagaggaaacuggcgaacugugc
........((((((.((((((((((((((((((.(((((.((((((....)).)))).))))).)))).))))))))))..))))...))))))........

Structure
ccccucuc      --a    --          -    c     u    -  a 
        cgcuag   ccuu  uggcccuuga cguu gagaa caga uc a
        ||||||   ||||  |||||||||| |||| ||||| |||| ||  
        gcgguc   ggag  AUCGGGAACU GCAA CUUUU GUcu ag u
cgugucaa      aaa    aa          C    U     C    c  g 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature hco-miR-5959

Accession MIMAT0023463
Description Haemonchus contortus hco-miR-5959 mature miRNA
Sequence 56 - UGCUUUUCUAACGCUCAAGGGCUA - 79
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22216965
    Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
    Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
    BMC Genomics (2012) 13:4