miRBase entry: hco-mir-5964

Stem-loop hco-mir-5964


Accession
MI0020137
Description
Haemonchus contortus hco-mir-5964 precursor miRNA


Sequence

gucgcguuauagcuucccgugacucggaaagucgcgauuugaaaacgcuuucuccuugaaagcgCUUUCAACUCUCGACUGUCCGAAucauggugagccauuuuaugaaga
...........((((.((((((.(((((.(((((.((.((((((.(((((((.....))))))).)))))).)).))))).))))).)))))).)))).............

Structure
--gucgcguuaua    c      c     a     c  u      a       u 
             gcuu ccguga ucgga agucg ga uugaaa cgcuuuc c
             |||| |||||| ||||| ||||| || |||||| ||||||| c
             cgag gguacu AGCCU UCAGC CU AACUUU gcgaaag u
agaaguauuuuac    u      A     G     U  C      C       u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature hco-miR-5964

Accession MIMAT0023469
Description Haemonchus contortus hco-miR-5964 mature miRNA
Sequence 65 - CUUUCAACUCUCGACUGUCCGAA - 87
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22216965
    Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
    Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
    BMC Genomics (2012) 13:4