miRBase entry: hco-mir-5969

Stem-loop hco-mir-5969


Accession
MI0020144
Description
Haemonchus contortus hco-mir-5969 precursor miRNA


Sequence

aaaaaacucauaugggagguggacacauaacauaagccuucuuauuauauuuuacuauaagaaGGCUUCAUAUUAUGUGUCcaccuuugaguucccaucaggu
....((((((.....(((((((((((((((.((((((((((((((...........)))))))))))).)).))))))))))))))))))))).((....)).

Structure
------aaaa      uaugg               c  -            uaua 
          aacuca     gagguggacacauaa au aagccuucuuau    u
          ||||||     ||||||||||||||| || ||||||||||||    u
          uugagu     uuccacCUGUGUAUU UA UUCGGaagaaua    u
uggacuaccc      -----               A  C            ucau 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature hco-miR-5969

Accession MIMAT0023476
Description Haemonchus contortus hco-miR-5969 mature miRNA
Sequence 64 - GGCUUCAUAUUAUGUGUC - 81
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22216965
    Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
    Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
    BMC Genomics (2012) 13:4